UCSC Genome Browser on Mouse (GRCm38/mm10)
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chr16:4,500,000-9,500,000 5,000,001 bp.
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  Click on a feature for details. Shift+click+drag to zoom in. Click grey side bars for track options. Drag side bars or labels up or down to reorder tracks. Drag tracks left or right to new position. Press "?" for keyboard shortcuts. Use drop-down controls below and press refresh to alter tracks displayed.   move end
  
-   Custom Tracks
CA1_PGN_scATACseq
CA1_PGN_scRNAseq
CA1_R1
CA1_R1_TADs
CA1_R2_TADs
CA1_transcis
CA1R1_norm
CA1R2_norm
DN_CTCF_insigwidows
DN_EGR1_insigwidows
DN_ETV5_insigwidows
DN_FOXA1_insigwidows
DN_Neurod1_insigwidows
DN_Neurod2_insigwidows
DN_NR2F1_insigwidows
DN_NR4A1_insigwidows
DN_snATAC_10cellcutoff
DN_transcis
DN_UBP1_insigwidows
EGR1_ChIP
ESC_bulk_ATACseq_kim2018
ESC_LAD_peric_hupkes_2010
ESC_NADs_bizhanova2020
ESC_norm
ESC_transcis
Handoko2011_mESC_CTCF_chip
mESC_3NP
mESC_3NP_TADs
mESC_46C_scRNAseq
OLG
OLG_norm
OLG_scATACseq
OLG_TADs
OLG_transcis
Oligod_p21_scRNAseq
PGN_ATAC_sinnamon_2019_NR1_13cellcutoff
PGN_CTCF_insigwidows
PGN_EGR1_insigwidows
PGN_ETV5_insigwidows
PGN_LHX2_insigwidows
PGN_Neurod1_insigwidows
PGN_Neurod2_insigwidows
PGN_UBP1_insigwidows
VTA_dopa_scATACseq
VTA_dopa_scRNAseq
VTA_R1
VTA_R1_TADs
VTA_R2_TADs
VTAR1_norm
VTAR2_norm
-   Mapping and Sequencing
Base Position
p14 Fix Patches
All Gaps
p14 Alt Haplotypes
Assembly
Chromosome Band
Clone Ends
Contigs
Gap
GC Percent
GRC Incident
INSDC
MGI QTL
Restr Enzymes
Short Match
UCSC liftOver mm39
-   Genes and Gene Predictions
GENCODE VM23
NCBI RefSeq
GENCODE Versions
AUGUSTUS
CCDS
CRISPR 10K
CRISPR Targets
Geneid Genes
Genscan Genes
MGC Genes
Old UCSC Genes
ORFeome Clones
Other RefSeq
Pfam in UCSC Gene
RetroGenes V6
SGP Genes
TOGA vs. hg38
TransMap V5
tRNA Genes
UCSC Alt Events
UniProt
-   Literature
Lens Patents
UniProt Variants
-   mRNA and EST
Mouse ESTs
Mouse mRNAs
Other mRNAs
-   Expression and Regulation
ENCODE cCREs
Tabula Muris
CpG Islands
ENC+EPD Enhc-Gene
ENCODE Regulation
EPDnew Promoters
FaceBase 24STypes
new FANTOM5
updated JASPAR Transcription Factors
ORegAnno
qPCR Primers
RefSeq Func Elems
ReMap ChIP-seq
VISTA Enhancers
-   Comparative Genomics
Conservation
ClinVar Lift
Euarch Chain/Net
Glires Chain/Net
Placental Chain/Net
Vertebrate Chain/Net
-   Variation and Repeats
Common SNPs(142)
RepeatMasker
Alternate strains
Interrupted Rpts
Microsatellite
Mouse SNPs
dbSNP Archive
EVA SNP Release 3
EVA SNP Release 4
EVA SNP Release 5
RepeatMasker Viz.
Segmental Dups
Simple Repeats
WM + SDust
Invisible link